Enroll Now
Back to Blog
rate-limiting enzymes chart, metabolic pathways board review, biochem pathways cheat sheet, vitamin cofactors biochemistry, NBCE chemistry review

Biochem Pathways You Actually Need for NBCE Part I

Open any biochemistry textbook and you'll find dozens of pathways, hundreds of intermediates, and enzyme names that all seem to end in "-ase." No wonder Chemistry is the Part I domain students dread most.

Here's what most students miss: board questions rarely ask you to draw a pathway step by step. They ask about the control points: which enzyme limits the pathway, where in the cell it happens, which vitamin it needs, and what goes wrong when it breaks.

Learn those four things for a short list of pathways, and Chemistry goes from your weakest domain to a reliable source of points. That's what this guide covers.

New to Part I prep? Start with our 10-week NBCE Part I study plan.

The Big Picture: Everything Runs Through Acetyl-CoA

Before memorizing enzymes, get the map in your head. Carbohydrates and fats both get broken down into acetyl-CoA. From there, the cell either burns it for energy or, in the liver, builds it into something else.

energy metabolism · acetyl-CoA as the hub

When a question describes a metabolic state, place it on this map. A fasting or diabetic patient breaks down fat, and the liver turns the extra acetyl-CoA into ketone bodies. A fed patient has plenty of glucose, so the flow runs down the center to make ATP, and the extra goes into fat and cholesterol storage.

Rate-Limiting Enzymes and Where Each Pathway Happens

If you memorize one table for Chemistry, make it this one. Rate-limiting enzymes and cell locations are some of the most reliably tested facts in biochemistry.

Pathway

Rate-limiting enzyme

Location

What it does

Glycolysis

Phosphofructokinase-1 (PFK-1)

Cytoplasm

Glucose → 2 pyruvate, net 2 ATP and 2 NADH

Gluconeogenesis

Fructose-1,6-bisphosphatase

Mainly liver; starts in mitochondria, finishes in cytoplasm

Builds new glucose during fasting

TCA cycle

Isocitrate dehydrogenase

Mitochondrial matrix

Oxidizes acetyl-CoA; makes NADH, FADH2 and GTP

Glycogen synthesis

Glycogen synthase

Cytoplasm (liver, muscle)

Stores glucose as glycogen

Glycogen breakdown

Glycogen phosphorylase

Cytoplasm (liver, muscle)

Releases glucose from glycogen

Pentose phosphate pathway

Glucose-6-phosphate dehydrogenase (G6PD)

Cytoplasm

Makes NADPH and ribose-5-phosphate

Fatty acid synthesis

Acetyl-CoA carboxylase

Cytoplasm

Builds fatty acids from acetyl-CoA

Beta-oxidation

Carnitine acyltransferase I (CPT-1)

Mitochondria

Breaks fatty acids into acetyl-CoA

Ketogenesis

HMG-CoA synthase

Liver mitochondria

Makes ketone bodies during fasting

Cholesterol synthesis

HMG-CoA reductase

Cytoplasm (smooth ER)

The target of statin drugs

Urea cycle

Carbamoyl phosphate synthetase I

Liver; mitochondria and cytoplasm

Converts ammonia into urea

Memory hook: synthesis of fat happens in the cytoplasm, and breakdown of fat happens in the mitochondria. That separation keeps the cell from building and burning the same fatty acid at the same time.

Vitamin Cofactors Worth Knowing

Vitamins connect biochemistry to nutrition, a topic chiropractors care about and boards love to test.

Vitamin

Active form

Key enzymes it supports

B1 (thiamine)

Thiamine pyrophosphate (TPP)

Pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, transketolase

B2 (riboflavin)

FAD, FMN

Succinate dehydrogenase and many redox reactions

B3 (niacin)

NAD+, NADP+

Dehydrogenases throughout metabolism

B5 (pantothenic acid)

Coenzyme A

Forms acetyl-CoA and acyl-CoA

B6 (pyridoxine)

Pyridoxal phosphate (PLP)

Transaminases, glycogen phosphorylase, heme synthesis

B7 (biotin)

Biotin

Carboxylases: pyruvate carboxylase, acetyl-CoA carboxylase

Shortcut: pyruvate dehydrogenase needs five cofactors: B1, B2, B3, B5 and lipoic acid. If a question mentions any of them, think of the bridge between glycolysis and the TCA cycle.

When Pathways Break: Clinical Links

These are the connections that turn a biochem fact into a board question.

  • Thiamine deficiency in alcoholics blocks pyruvate dehydrogenase, so the brain can't use glucose efficiently. The classic result is Wernicke encephalopathy.
  • G6PD deficiency leaves red blood cells short on NADPH, so they can't handle oxidative stress. Triggers like fava beans or certain drugs (such as sulfa drugs) cause hemolytic anemia.
  • Statins inhibit HMG-CoA reductase, lowering cholesterol synthesis.
  • Uncontrolled type 1 diabetes pushes the liver into heavy fat breakdown and ketogenesis, which can lead to diabetic ketoacidosis.
  • Urea cycle defects let ammonia build up, causing hyperammonemia and neurologic symptoms.

Test Yourself: 4 Practice Questions

Cover the answers, commit to a choice, then check.

  1. Which enzyme is the rate-limiting step of glycolysis? A. Hexokinase B. Pyruvate kinase C. Phosphofructokinase-1  D. Glucose-6-phosphatase
  2. A patient develops hemolytic anemia after eating fava beans. A deficiency in which enzyme is most likely? A. Pyruvate kinase B. Glucose-6-phosphate dehydrogenase C. HMG-CoA reductase  D. Glycogen phosphorylase
  3. Pyruvate carboxylase, the first step of gluconeogenesis from pyruvate, requires which vitamin? A. B1 (thiamine) B. B6 (pyridoxine) C. B7 (biotin)  D. B12 (cobalamin)
  4. Where does beta-oxidation of fatty acids take place? A. Cytoplasm B. Mitochondria C. Rough endoplasmic reticulum  D. Golgi apparatus

Answers

  1.   PFK-1 is the main control point of glycolysis.
  2.   G6PD deficiency reduces NADPH, so red blood cells can't handle oxidative stress.
  3.   Carboxylase enzymes use biotin.
  4.   Fat breakdown happens in the mitochondria; fat synthesis happens in the cytoplasm.

Missed one? Add it to your miss log, as we describe in our Part I study plan.

Biochemistry FAQs

Do I need to memorize every step of every pathway for NBCE Part I? Rarely. Focus on the rate-limiting enzyme, the cell location, the vitamin cofactors, and the clinical result when the pathway breaks.

How much ATP does one glucose molecule make? Newer textbooks estimate about 30 to 32 ATP with full aerobic metabolism. Older references list 36 to 38, so check which figure your course materials use.

What's the most important biochem table to memorize? Rate-limiting enzymes and their locations. They connect directly to regulation, drugs and disease.

When is Chemistry tested on NBCE Part I? It opens Session 2, before Pathology and Microbiology. See the NBCE Part I exam page for current details.

Where can I review Microbiology next? Our microbiology cheat sheet covers the other end of Session 2.

Stop Drowning in Pathways

The students who struggle with Chemistry usually aren't short on effort. They're spending hours on details the exam doesn't ask about.

The Chiro AlignEd Learning Part I Review Course focuses your time on what's high-yield:

  • Exam-aligned lessons that teach the control points, not every intermediate
  • Searchable videos so you can jump to PFK-1, G6PD or any pathway in seconds
  • Quizzes and full-length practice exams to make recall fast under real timing
  • Access Until You Pass™ Guarantee: if you don't pass, we renew your 90 days of access at no cost when you meet our Exam Readiness Standards

"The review course exceeded my expectations." — Taylor R., Part I & II Review student

Start the Part I Review Course →

Want more free reviews like this one? Get weekly board exam content in your inbox.

Explore Our Courses

Don't Miss Any Tips!

Newย tips, tactics and strategies for effective studying and test-taking sent straight to your inbox.

We hate spam. We will never sell your information, for any reason.